Scaffold B570J40625_100030802

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold B570J40625_100030802

Scaffold B570J40625_100030802

Overview

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100030802 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8443
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (16.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029719	Metagenome / Metatranscriptome	187	Y
F085584	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10003080213	F029719	AGAAG	MNSIKKLLKSAPRMRNTLPQNITRGNGVRNPQKASAYVGKGVLKNGDTITSIKGSISPVPNGPLIKRKGIVRGVSVKGSTLKTGGKVKVMAGGEKHVVYKAAKNTTKSTKGDIIVNHPTKDKGKWDTINLSRIGRAKTVKQGVASTKKWHRDNPNYKYKSKKK*
B570J40625_1000308024	F085584	N/A	MGKLILSLEDENVSLYSKQYLSIIELSDEIEVRLEDIAKMDKRKRKELKQAKQDVNFLIDMYNAKSKFKTYNRVK*

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