NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100056312

Scaffold B570J40625_100056312


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100056312 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5478
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F034472Metagenome / Metatranscriptome174N
F043940Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_1000563121F034472AGGAGMPNWVYNTLTIQGPKGEIDSIKDRLNKPFTLAIETHGMGDIN
B570J40625_10005631211F043940AGGMRNRFRVEIYDENKANDLTIYSEQGVDKDYLTELVFSNRRRFFGNVRAYVFDTLKKKKTTALYLPMEIVNEGRPKQLTKYEIGLT*
B570J40625_1000563122F000450AGGCGGMGDRANFGFVQPNGNTVVLYGHWAGYQMLGRLADAVIAARPRWNDSSYATRIAISQLVADQWNMETGWGLYVNEIGDNEHKIAIIDWEQQTFSLHEEAPRNDLDNKVNGMNNNALFTMDLTAFCEKYALEQILTV*
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