NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100069610

Scaffold B570J40625_100069610


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100069610 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4687
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F002071Metagenome / Metatranscriptome596Y
F005177Metagenome / Metatranscriptome409Y
F021481Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_1000696101F000450AGGCGGMGDRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAVFKARPRWSDPSYATRITISQMINNDWGSETGWGLHVNEIGDNEHKIAIVDFNQQTFSLHEEAPRNDLDNKVNGMSNEAIFTMDLSNFVEKYADVTLSV*
B570J40625_10006961010F021481AGGAMSPILDTARGRFYRRGDVFTTGKSGITGTITEIIAIRPNLTKLRLDTGAGMRYAMVKIGK
B570J40625_10006961012F002071N/AMATLEIGQTITTAKSGVVGVIKAVDNHPSGVARVLLDVNGSERWTSVEV*
B570J40625_1000696109F005177AGGAMKNRYRVEIYDENKANDLTIYSEQGVDKEYLTELVFSNLRKFDGDIRAYVYDNLKKKKTTALILNRESLPPKTELTKLLG*
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