Basic Information | |
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Taxon OID | 3300002835 Open in IMG/M |
Scaffold ID | B570J40625_100076219 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4388 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (76.47%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007691 | Metagenome / Metatranscriptome | 346 | Y |
F009531 | Metagenome / Metatranscriptome | 316 | Y |
F020910 | Metagenome / Metatranscriptome | 221 | Y |
F022197 | Metagenome / Metatranscriptome | 215 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
B570J40625_1000762193 | F009531 | AGG | MTKQVAIYEMNYSCSPGGIDCWEATIQGYGESTTASDFKTAGEALNWVLDRHPDEMLELVVTSLPAYEKEYV* |
B570J40625_1000762194 | F022197 | AGGA | MTLETETMENPEMYADYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIEENVFLPELGEWHTK* |
B570J40625_1000762195 | F007691 | GAG | VAYKVNTIDDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIAHYAGIEVG* |
B570J40625_1000762197 | F020910 | GAGG | MWSKYTFVCDPDECDALIQFTARDGYGFPNGSVEMRCPCGRKMAYISIEDAWEPIITDVSKVTPREVVKINTNPYN* |
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