Basic Information | |
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Taxon OID | 3300002835 Open in IMG/M |
Scaffold ID | B570J40625_100078021 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4314 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F022399 | Metagenome | 214 | Y |
F023329 | Metagenome / Metatranscriptome | 210 | N |
F031460 | Metagenome / Metatranscriptome | 182 | Y |
F053253 | Metagenome | 141 | Y |
F084156 | Metagenome / Metatranscriptome | 112 | N |
Protein ID | Family | RBS | Sequence |
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B570J40625_1000780214 | F022399 | AGGTGG | MDNKYKSIYSKNGLEVFVNPEDYWADYKVRLNGHHAKTFYGETAWMDVTRFVHDQAVEFWDFNTDGIHRQWQQDIMAELESRFAND* |
B570J40625_1000780215 | F084156 | GAG | MLCPMVYENRNTIMVTDLCWYDTKQGDNCQWECSDIPGLFYCNNCDRLRQWNRFAQAYSYYVREGHYGF* |
B570J40625_1000780216 | F053253 | GAGG | MDFDLDTPIEKILTDMLDKVEGHVGDCDCVNCNSLEVLAYMIKVEE* |
B570J40625_1000780218 | F023329 | GGAG | MVEETQDKDKELAQLEAFFKYNISTDEILSGRLKILLADLSWRMDLPTWTKEELDIMCARMDALVEVSNLLYDIQWHRLNWEKKQNG* |
B570J40625_1000780219 | F031460 | GGAG | MAKYIDSVELNVQMWSTVVLSAEEIQDIYPEFEDMTDFDDTDALEQALQDHMDMNYLEHIQYADGAMDECTVHFVYEDDGSE* |
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