NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100171402

Scaffold B570J40625_100171402


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100171402 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2420
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F011938Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_1001714024F002060N/AMEINYISVIIAISAAMVSGMGTAIIAGLRDGKKEKRRQIEREQDHLKLEVKDLKIALYKIERELTEWKDKYYDAIQELISVKSELEETLLKLSFMDHKIDDLDGVLDREF*
B570J40625_1001714025F000671GAGGMEKILCYSCNKSKNKLDIKKSTLMPINLFMCESCSSAKLEPRWVIILAGRANGSDHVKEFVIKRRYLGNEISASELLV*
B570J40625_1001714026F011938GGAGGVKEYYDTTHIVFIHAEQICGVVEKLGAWASIVTFTKDKVEYKELMENEEFTIINEIVFKHIEESD*
B570J40625_1001714027F000473GAGGMFIDKSADKQREHFKYGINHWTGEPNKPVFYTEEMKKKVHQIKKPSLLLMDVVMYPDFLALRLYEDNFLQFEGIKKEMVIDYVKKVKKLIESYGVRCEMEGKPSERVL*
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