NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold contig_10001

Scaffold contig_10001


Overview

Basic Information
Taxon OID3300002845 Open in IMG/M
Scaffold IDcontig_10001 Open in IMG/M
Source Dataset NameStormwater retention pond microbial communities from Williamsburg, VA - Sample from Crim Dell
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36026
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (77.05%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location
Location NameWilliamsburg, VA
CoordinatesLat. (o)37.270661Long. (o)-76.7142Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077217Metagenome / Metatranscriptome117N
F081081Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
contig_1000130F081081AGGALNEQEHKYRCGVRQLCKWRHEWGLAKFREYLSNYKLDSQLLTDFADQWKKGNKGNKGEWIE*
contig_1000140F077217AGGAGMNHAIKDVIESKYTVKTFQERGYDEEVPIIGFAVEDLETVIKSVVLACAERVTNDRERRDILSLAS*

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