NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0005260J43197_1014525

Scaffold Ga0005260J43197_1014525


Overview

Basic Information
Taxon OID3300002880 Open in IMG/M
Scaffold IDGa0005260J43197_1014525 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_150m_B (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1022
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.7299Long. (o)-123.5699Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029271Metagenome / Metatranscriptome189N
F075397Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0005260J43197_10145253F029271AGGMSKLSDLQEIKKLLDVDFRRHQFLDNQYNNSPSFNYDAAKSYVANIHQFLSEKYGEAVIYNFMQEVESLRITTLKMYIESNIASYQKFGAQK*
Ga0005260J43197_10145254F075397GGAGMKYWHKRVEVVSFFDLDKESQAAELKDDDNAEELAFLIAENGDEYWNLDLFMRTESNGRYDGVMGLTNTSAIGIVLSCSGK

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