Basic Information | |
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Taxon OID | 3300002898 Open in IMG/M |
Scaffold ID | draft_10034345 Open in IMG/M |
Source Dataset Name | Metagenome Biopara biogasfermenter May 2013 pooled |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5106 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Biogas Fermenter → Biogas Fermenter Microbial Communities From The University Of Hamburg, Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | ||||||||
Coordinates | Lat. (o) | 50.823236 | Long. (o) | 7.142629 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F029451 | Metagenome / Metatranscriptome | 188 | N |
F054066 | Metagenome / Metatranscriptome | 140 | N |
F079824 | Metagenome / Metatranscriptome | 115 | N |
Protein ID | Family | RBS | Sequence |
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draft_100343454 | F054066 | AGG | MFRTTRKAKELNRFRVGKGSPGLKAVLYRMLNKPYLDIRIYRGYREVTRIVTPDKGMRRFVVDGVGAFVMPNEEQMLRQLHDRYALYINYNINSSVPGQVTEELEPIAFKYPPLSPAEFQTELEAQTVADLLAETEKDNSWIWLLAGGAVLIFIMILIFGGA* |
draft_100343455 | F029451 | GGAGG | MAVDLEDLIASTSSNAGQPSIIEALLSTVDSIFTNNRMLQRSRLSARNIRGVVRVIGSQAFLRARLERSYQPFLDPDTGEFTYGRYDNRVLTAICEGALSGRISLDGKSRDEIIRIFQAVGSTVQEEPAGRSGILGRFDY* |
draft_100343456 | F079824 | GGAGG | MIYGFFGSIPGCPHNRGNHALRGNGKTLCLTFVGYVDALRGRRVISNYKTSFSEYVAVEEIARMVVEDNIRDTTILITEMQVYLNSLGVNSNDLKEFIGSVVGQSRKRNTDIHYDTQRYGDIHPRLRVQTDRAFLPRKFHVDGEPCHKDRCKEKHVIYLYQHDPYLHEEVIRLNAEAFADLYNTNEIIAVPKRKSKRRKT* |
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