NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold draft_10471555

Scaffold draft_10471555


Overview

Basic Information
Taxon OID3300002898 Open in IMG/M
Scaffold IDdraft_10471555 Open in IMG/M
Source Dataset NameMetagenome Biopara biogasfermenter May 2013 pooled
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)563
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Biogas Fermenter → Biogas Fermenter Microbial Communities From The University Of Hamburg, Germany

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)50.823236Long. (o)7.142629Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048180Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
draft_104715551F048180AGGAGGMKWLLVKGGFRHEGVKYDNEKEMEFPETLEELMENYSEQEIVKKFNAELRRNYATQLREEKALELGIQKVSKADQAQIDFLKGILETLGVDTEELRTLADYQEALKEATQS*
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