Scaffold JGIcombinedJ43975_10014508

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGIcombinedJ43975_10014508

Scaffold JGIcombinedJ43975_10014508

Overview

Basic Information
Taxon OID	3300002899 Open in IMG/M
Scaffold ID	JGIcombinedJ43975_10014508 Open in IMG/M
Source Dataset Name	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1259
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location
Location Name	Manhattan, Kansas, USA
Coordinates	Lat. (^o)	39.214	Long. (^o)	-96.5852	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016700	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ43975_100145081	F016700	GAG	VKRINVRAALIALFLGLAAVTPGQAEEYYVYQTPNGALVISNKEPPPGSKIIKRHSWPEATDSEVSQSQPPNNPPPNVQAESAPKPSKTK*

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