Scaffold JGIcombinedJ43975_10044739

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGIcombinedJ43975_10044739

Scaffold JGIcombinedJ43975_10044739

Overview

Basic Information
Taxon OID	3300002899 Open in IMG/M
Scaffold ID	JGIcombinedJ43975_10044739 Open in IMG/M
Source Dataset Name	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	740
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lupini	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location
Location Name	Manhattan, Kansas, USA
Coordinates	Lat. (^o)	39.214	Long. (^o)	-96.5852	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032005	Metagenome / Metatranscriptome	181	N

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ43975_100447391	F032005	N/A	YFPLFTAGITIALYLLGIRKEDKMKTKAWLSVLVISAVLVVPHAALSRDDDYNRRGDWSDRWNDNDVRHLQGRWYLNGDPNKPTDIHMNGRRLEATNENGRKSRLEMDRRGDIRASDWQGVRGDVKGNRIEWSNGTMWTRKPSDRNGYGDARQLQGRWYVNGDPKQPAEINGDARNLQARNEKGQTSRLQLERDGDIRALDWNGLHGDVRRDRIQWANGTTWTRSPSELSRR*

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