NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGIcombinedJ43975_10095266

Scaffold JGIcombinedJ43975_10095266


Overview

Basic Information
Taxon OID3300002899 Open in IMG/M
Scaffold IDJGIcombinedJ43975_10095266 Open in IMG/M
Source Dataset NameSoil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)541
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location
Location NameManhattan, Kansas, USA
CoordinatesLat. (o)39.214Long. (o)-96.5852Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050653Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
JGIcombinedJ43975_100952661F050653N/AMLPQTHVWSRTQKVLIIAATFVAPIAFVALIYTYERDHPLPDASILVGTWEMTAPSVANSSTFLRLDPEDTAAWHSGAWVRNDSSGKQGYSAMTWYAGGQYIYMRFPEGWPQIWQIVEIL
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