NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24801J43971_1010136

Scaffold JGI24801J43971_1010136


Overview

Basic Information
Taxon OID3300002903 Open in IMG/M
Scaffold IDJGI24801J43971_1010136 Open in IMG/M
Source Dataset NameSoil microbial communities from Manhattan, Kansas, USA - Sample 200um Nextera
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)517
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location
Location NameManhattan, Kansas, USA
CoordinatesLat. (o)39.214Long. (o)-96.5852Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051771Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
JGI24801J43971_10101361F051771N/AELRSENERRRAVYLALDRELTQMAETHGPRFQKEMTLQLIAWDQAIARGEKPVPPTFRLPGAERPPTGVWDAAVATGSIQLIDPELFYELARFYNRADSAGILYQRYSEGAQTYVWPYLTDGSSAFWKPDGKLRPEVLASVQRLRDFRQKQGELGREAYSLRAALRRAASQ*

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