NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25614J43888_10005151

Scaffold JGI25614J43888_10005151


Overview

Basic Information
Taxon OID3300002906 Open in IMG/M
Scaffold IDJGI25614J43888_10005151 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4184
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007185Metagenome / Metatranscriptome356Y
F008766Metagenome / Metatranscriptome328Y

Sequences

Protein IDFamilyRBSSequence
JGI25614J43888_100051514F007185GGAMPGLVKFPKRYLVALLVLITGIGLAAVFSPRSASGGETHDAIVAEGGGTTIIHSGTGPSGGFVPVLTTVAFHAERTGGHVTGSFDCLALAPEASTGSKSGQFTINAMYVAGQITGATVNGDSATLTGTADITGLGAGSNVSFKFVVRNGGPGAAAVLTVSELTFNELLVEGSFRVRSED*
JGI25614J43888_100051515F008766GGAVTPATPNGSPLGFHSYDPGVAAGSLVLWGTPYPAGSGRVDIAGGTAELLVHNVCVFDAFTVPNSFDPTHALGIFSAIINSMKIEWSGVTRSVPFSDATNKFRGDFFECSATIAVSATTPKDTGRGFHFESDPATTRTNFAQFGTEHNGVFF*
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