Scaffold JGI25614J43888_10034156

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25614J43888_10034156

Scaffold JGI25614J43888_10034156

Overview

Basic Information
Taxon OID	3300002906 Open in IMG/M
Scaffold ID	JGI25614J43888_10034156 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1594
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000794	Metagenome / Metatranscriptome	889	Y
F002225	Metagenome / Metatranscriptome	580	Y
F017522	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25614J43888_100341561	F002225	GAGG	VLRLQVVRERARQPRDGSSGQVSKRSNQRLLERLEAENAQLRDSVVDLMLQIQALRDGAK
JGI25614J43888_100341563	F000794	N/A	MAKATTKLNAQDRVILFCAATGIEHAAVGIPARTMQSMAVRGFIVHNRESGGYALTDSRRAALMAILRMLG*
JGI25614J43888_100341564	F017522	GGAGG	MPSRAQRERSDRRRALRLLAGAPEGVTEALMLAHGFRVELLVDLCFAGLAIAKPEHMLAGGRTMEVVRMTITEAGRQALTGKGTQ*

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