NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25614J43888_10043548

Scaffold JGI25614J43888_10043548


Overview

Basic Information
Taxon OID3300002906 Open in IMG/M
Scaffold IDJGI25614J43888_10043548 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1386
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008656Metagenome / Metatranscriptome330Y
F025586Metagenome / Metatranscriptome201N

Sequences

Protein IDFamilyRBSSequence
JGI25614J43888_100435481F008656GAGGMDPPIGPAGDDASSNLGAAGADMSTDLTPRTALVALAAFLASPAHAQPAPGQAPPNAVSIEQSAVFDVTPVTGALKETAQKGQQLVWRARRSPNDRRFELTDMSVAFLRSEAPTQVKITFAAHVSAFGWRPESDPQLEVIVRTRGGASIYFWNFAVSVRCADSNRPLPPLSQVVPNDIAANLFNNV
JGI25614J43888_100435482F025586AGGAGGMRTITVVLLALLGMTLTGVSANAGAWCANYLRGVSNCGYSSANQCWATVRGLGNGFCAPNPYPGTAYGSGGSWNTPKSRKRYQRSY*

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