Scaffold JGI25382J43887_10000215

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25382J43887_10000215

Scaffold JGI25382J43887_10000215

Overview

Basic Information
Taxon OID	3300002908 Open in IMG/M
Scaffold ID	JGI25382J43887_10000215 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16773
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063581	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25382J43887_1000021510	F063581	N/A	SGAINASLIVAGSAGLALGVRLAAAPLVSVGVPQRVGNPEQVVQPSPNAHPDSLVAVLVARDPFRVTRRPSNVVYDPLRLAQPATPPPPKPLLALVGIVWDNGRDPTALVEGLPGVDGPRPVRQGETIAGLRVKAIKPDRVVITGLDTTWTLTVREPWK*

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