Scaffold JGI25382J43887_10298003

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold JGI25382J43887_10298003

Scaffold JGI25382J43887_10298003

Overview

Basic Information
Taxon OID	3300002908 Open in IMG/M
Scaffold ID	JGI25382J43887_10298003 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	707
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038167	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25382J43887_102980031	F038167	N/A	GQEKRVIGWLNKGRWTLVALALILLASVVSSGSAAAPSPQENVSLFVGNKLVVSSSQQAIKSVFVRGNLTAATVSNVSYPSKNFTMTTNSTQLYTLNIWLSYPSTYYPAIIINDPTTGSNIQYTSYYVSAGDLNLTIFADFQPAPNNGGGVPLSWSSFFGWFSQFGNAFPLWIKVLYMILGAQFAYVGYRWIKFEDEKRRIEGHLPPLDRGNRIYMWIDVVFRTLLAGFIISLAL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.