NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25388J43891_1001236

Scaffold JGI25388J43891_1001236


Overview

Basic Information
Taxon OID3300002909 Open in IMG/M
Scaffold IDJGI25388J43891_1001236 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5306
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007493Metagenome / Metatranscriptome350Y
F026411Metagenome / Metatranscriptome198Y
F041398Metagenome / Metatranscriptome160Y
F080432Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
JGI25388J43891_10012361F007493N/AMDEWLTGQDDLPEACPPEFVSXIFSSRDSEFISQLESVDLKRLFLRERNAVALLWVQQTAATIRRIMRHHLEASRLSADIKFAMEARIFLQYAQLRLICGTLFLLIGLAGLERLHWMALRADKLTQRIGNVLREFESGARSREMDGVQS*
JGI25388J43891_10012363F041398AGGAGMTKSRTLAAFAMFVLSAAVAVFSGAIPVPFLNAGKHSLPAIQSNGAVTLIADGGDPQPPPTPLPWLV*
JGI25388J43891_10012366F080432N/AMSVNIHTGGRTLVEIQKGERWRCQNPVCGSEILVTTSSRARGGSNPRCSCGEIMKKPYTQPGLRPFESEVEARVKLEASRD*
JGI25388J43891_10012368F026411AGGMKGQEQKDSAAPMGTSPAMECRAEFIFYARNQSRKLGSVEVLGDYTCDFRRPDWAHRWTDWNSGRNQYLNLFLCAKHARELGLL*
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