NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25388J43891_1001839

Scaffold JGI25388J43891_1001839


Overview

Basic Information
Taxon OID3300002909 Open in IMG/M
Scaffold IDJGI25388J43891_1001839 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4460
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000528Metagenome / Metatranscriptome1047Y
F050281Metagenome145Y
F091706Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
JGI25388J43891_10018395F050281GGAMIYRRQFSSEQIEKIARTKDALGRLRANPADAVAVLALYETCGRELQEVGVRYFGKNQLGKKAVLNLLVAVVSRAWSYDPQSMSASEWVSRVADAEARKLWEALDAGGSGDQLTRRAM*
JGI25388J43891_10018396F000528GAGMGEWKAQISLRVRQALRAELEEFAVRERRKLGNITELILEWAFEQLKTAGSTERLLKYKIRLPDTAATGRKLHK*
JGI25388J43891_10018397F091706AGGAMKADSFGEIFLWNREMDCLIRVLQRRESSGILSKHEMRVYWVQLEEVRARLNADFAGRTATSERADQSRLKRQRTAWERKTPESNQKDLPQ*
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