NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI25388J43891_1002269

Scaffold JGI25388J43891_1002269


Overview

Basic Information
Taxon OID3300002909 Open in IMG/M
Scaffold IDJGI25388J43891_1002269 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4026
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_2_20CM_2_52_21(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073369Metagenome120Y
F085495Metagenome111N

Sequences

Protein IDFamilyRBSSequence
JGI25388J43891_10022694F073369N/AMFPSRSTASDDVKLWLPRHKCRICGVEVEFAQVKVHYQTTHPEYAKWGRQLHTLIWLALGSGVALVIVDALYLRSVNQILQYIVPGYLFGSCFLVIGLHVRKLISFRDAWEKTHP*
JGI25388J43891_10022695F085495N/AMASVVLRLFTNIYSYFVVYVLTASWLGSLGAVYLPFRLSLNTDLGLLILSAFSLAPIAGKYRIMHKPDRIGALVLAFAVFVFYLTIATFLRILGFASLPLGTPDSVVFLGLVAIYIPTLTLYAIRQRKRSLQS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.