NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25390J43892_10000038

Scaffold JGI25390J43892_10000038


Overview

Basic Information
Taxon OID3300002911 Open in IMG/M
Scaffold IDJGI25390J43892_10000038 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17364
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (42.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004048Metagenome455Y
F022626Metagenome / Metatranscriptome213N

Sequences

Protein IDFamilyRBSSequence
JGI25390J43892_100000381F022626N/ALKVQKPSWISAIEVHDLIQRRPWSILSWGAGIIALAFIGYYGILSIGNPPVDVGAQFVNAEFPPPSISPWFYGKPITWFIYAAFLYWSAGLEAQKIHFLKFSERTRRFLFIVTALVAFGAFYEIFYNFMIWSALEVLTQSCSPSPCSPDVISSRWPLLPKPLNLVFVTKVVVLVFSLSVYSLWFLYRVDKEIERRNPIPPATYSRQDLYGADTVKPAPMTPAYSFAVTTGGQDPPESLQS
JGI25390J43892_1000003814F004048N/AMPFWYRQILWGRLDRYNSTGWVISKPIILSKETVTVPGSLPVAELMLPEFLKGKLSLNEWRILIALHMVRFKTYNQGRMSRLLGKIALAPRGLFFLLLFYIPAAASGGLSGPILYFPSPIFLIAALWIRRSLRRSLKRREFELDRNVAKQLGTLQVSQVLEKVENLDQKRIPTDIRLFLLPYVAYWNPSIKERIGELSKPHLQDLPRWSRIPRIGLRGRVIIVLVGFGTFWGSGLVEGNIYARGQTTVVCMDTTCSALVVIAAVGYWMAIIGGISIIVWIARRFF*
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