Scaffold JGI25390J43892

Basic Information
Taxon OID	3300002911 Open in IMG/M
Scaffold ID	JGI25390J43892_10000086 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002911 Open in IMG/M

Scaffold ID

JGI25390J43892_10000086 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14307
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (63.16%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14307

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (63.16%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007968	Metagenome / Metatranscriptome	341	N
F010240	Metagenome / Metatranscriptome	306	Y
F021077	Metagenome / Metatranscriptome	220	Y
F043868	Metagenome / Metatranscriptome	155	N
F053208	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25390J43892_1000008612	F021077	N/A	MPKIKFKKEYLERLTKPIEKKERAKKEETMAEVQSQPRHATGFVQFCGTCGKNQMFRVDTLGWKSCTVCRXTAPDRSQSPI*
JGI25390J43892_1000008615	F010240	GGA	MIRQERWVLFRDLPRRILPATKVRELLGVYLLASLSNAFLASSQYLAVSSAVASYLPVDSGTATLIAAYGRGLGIFLAVFLNSLVFEGILAALVLILSLSAALKTGWRWAYAFSGVMVSGFVGYWLGARFLVVLEWISTLQDNRVDSSNAYASLFWFGLASTIFYLAMILVLRKSYGNLREQIGCQG*
JGI25390J43892_1000008618	F053208	GGA	METMRYGRTYLAISISNVTFPRTGIGTDYSLVISDVNQTLTDSIVKGFGARVTSLSIQDSVDGSTLTWGNGHDMSDAVQATSIFFFRTSTNHMLRFTIAFQLYDLLPLGSIPDQTVTDSFNITQTVL*
JGI25390J43892_100000863	F043868	GAG	MESRKRRRKHSKRLASSKYKIRVRYKYHYYRWINTKDYGSFKDIYEKYKDKGYTFWCVPKGDPVFANPGLETMGEQLDSVVSYNGNYEIPTRYFERDYAGDLVVVKPFLLPETRLTPEHPVLFCGSTPQKSKWYDPQTRPSLKKEWKPASELTRDDWVFFPIFKGNREADPELLYLLGLYMAEGYPTGKQVCFSLGHHERELAERICRMVARHWNVRATINSHRSGLSVRLSKESLADFMRKEFGSRAFNKKIPSWILEQRNPRPFLDGWIQGDGFRQGNTWRLHTSSRTAAYQALLIGSRLGIMPAIYRDDREGRHLIEGRRVNAKPSYEVRFHLEGSKYSNKESHVVRTRNGYWIRIKEIQREKFSGKVCNMETPSNTYLLSFIVHNCADLPPEFSNQDGTWTGYRLDGDKTHTASTLKRYGRHKSWIDPQYKFEGKPVILVYNAACLGKGIPIILRKARKQR*
JGI25390J43892_100000864	F007968	GAGG	MRYILTVDFEDDIDIESFMHFVAYHTKRLKCASKDVFIRLAHEWEKQLVNPHEPTNPNGVKKEKKKTLKETSE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25390J43892_10000086

Overview

Ecosystem & Geography

Associated Families

Sequences