NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25390J43892_10000408

Scaffold JGI25390J43892_10000408


Overview

Basic Information
Taxon OID3300002911 Open in IMG/M
Scaffold IDJGI25390J43892_10000408 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8207
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030218Metagenome / Metatranscriptome186Y
F072200Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
JGI25390J43892_100004085F030218AGGAGMKRTALTLALATFLATPLTAQWLGMPAWNGPKGGTGVSFYGDYGAPNDNAGKGNAFGGRVALGVGTITLTAGVASWKVDSLNVRVTSYGGTAAFRLIGGSLIPVSVGLQLGAAHSAAVTFGQGGFYPAQTSVLAAVGLSVPLPTPGISVEPYFAPGIRYHKTPAGVTDHQTNFGWVIGGNFSFGLVGIHVAYDSEKWEDGTHGILGVGADVGLRLPMGL*
JGI25390J43892_100004087F072200GGAGGMRKCIGSALLVAVLATVPGLMAAQRRAAAEAGPQNELGVDLAFQYVSLGSNGGSGIQLAAPVDARVGFLSRGPNMFEVRAAVDWDSNIGTVAFSPGVNVLHLLKRGSGTRGLMRAPYVTAGVGLNILKFGSGANTETQFAIGGGVGKRLPYGSAVFRPEGYLAYAFSSGVLPSAVSIGIRLGLSFWH*
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