NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25390J43892_10007479

Scaffold JGI25390J43892_10007479


Overview

Basic Information
Taxon OID3300002911 Open in IMG/M
Scaffold IDJGI25390J43892_10007479 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2497
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002498Metagenome / Metatranscriptome553Y
F040030Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
JGI25390J43892_100074791F040030N/AMPYXYRQIVWGRLDRYRSTGGIISKPTILSKETVTVXGSLLVAELMLPEFLKGKLSLDEWKILIALHMVRFKAYNKGRMXRXLGKIALAPRELFFLLLFEIPAASSGGLSGPVLYFPSPIFLLAALWIRRSLRKSLKRQEFELDRNVAKQLGTQQVLQALEKIQNLDQRGMSTSRLF
JGI25390J43892_100074792F002498N/AMNAYIFGNTDCRCARVKAQERIYSLNKGVESLSKEEHGLFFDAMQRLGLPNEVKQAAVALYLDFKSRPIGEYNADHKNLEIFLIASVSLAAKAMGDLRTDHEFESKMFVSREKLLDAEXRIIKSFGVQDSILPFPDLVSQLTKRQIXSMAEGFAERGLVSSNEREELVRRSHDYLDAAVEKGLGPKMSYRGRAAGVMLKAVRDLELQIPEMDIARAAGFDKRXMATNADVIDALLKDSKSSRRKET*
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