Scaffold JGI25390J43892_10015693

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25390J43892_10015693

Scaffold JGI25390J43892_10015693

Overview

Basic Information
Taxon OID	3300002911 Open in IMG/M
Scaffold ID	JGI25390J43892_10015693 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1798
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043318	Metagenome / Metatranscriptome	156	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25390J43892_100156931	F043318	N/A	VAIPPVGQLPEPLRLPHGSVRGAIAVIVTAAYGYVLLQGGSTPIVPTVLVNAVVVVIAFYFGSRAVSTPSAVVPSQTAPPAPHHPRLVRILLFLGFASLTAWFLTRNPSLQGIPADLLAVLQVLGGYVLGATASWLVHRRAHESHIRHRLATIFRDIVAVGALGLTAYICFALVTKQGGLLAGRAEQALSLVVTFYFG

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