NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI25390J43892_10111190

Scaffold JGI25390J43892_10111190


Overview

Basic Information
Taxon OID3300002911 Open in IMG/M
Scaffold IDJGI25390J43892_10111190 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)620
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000986Metagenome / Metatranscriptome813Y
F008754Metagenome / Metatranscriptome328Y

Sequences

Protein IDFamilyRBSSequence
JGI25390J43892_101111901F000986AGGAGGMMLLAKAALGLGATVVLVGAYTMREGVIRVDVEEYRAGGSHVHLWVPAAAVPMAMHFVPSKHMRHASEQAREALPVLHAIVKELKRYPDAEFVEIDDNAQHVRVRTHGGKLQIDVDAPDQKVHVLCPLSAIEDVTSQLEEHATGA
JGI25390J43892_101111902F008754N/APMKVIDALFSAGKDELDLVAALHALSAQGDTELVSVKDHENTVRVWLDSKNVTD*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.