NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25386J43895_10001510

Scaffold JGI25386J43895_10001510


Overview

Basic Information
Taxon OID3300002912 Open in IMG/M
Scaffold IDJGI25386J43895_10001510 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5582
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023811Metagenome208Y
F041660Metagenome159Y
F067615Metagenome125N

Sequences

Protein IDFamilyRBSSequence
JGI25386J43895_100015102F041660AGGMMVSHDTKRILGISSLVLVLLLLLARSLPFPFPGSQQSAIPRNPRGPSGDAPTLIFSDNASFTKAPTFTLTLTQSHSYMWSFNVTTGSVKVDLTDPQTSSIFWTVGPRSVGQWHLNVTSFASFNWTAPASTDYSMVLENQNLWSWSTSLSSSTSPLSTCDIHVWDLNIPGPPRIIVQ*
JGI25386J43895_100015103F023811GAGLGAYVIVERVLLRPKGGEAIGSVLLAFMATGLISLLYNLNPFNSGALLLGVWVSSEIVALYLFQNQRKNEKEFQKHPVSFPNPEGGGILGEYMNRPWQSELAELGRRYPSKKAKKPKKD*
JGI25386J43895_100015108F067615N/AEVEEPLRQDMLKMPYKILTRRRKYFMVERNGGNREYAVMMDRSTHRGHELYQLEVEDVLNSPSPRTETLSINDVASMANYLIEEYSLEPTTLTKNQWLMSLPN*
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