Basic Information | |
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Taxon OID | 3300002912 Open in IMG/M |
Scaffold ID | JGI25386J43895_10003000 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4389 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Angelo Coastal Reserve, California, USA | |||||||
Coordinates | Lat. (o) | 39.73825 | Long. (o) | -123.6301 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012334 | Metagenome | 281 | Y |
F015579 | Metagenome / Metatranscriptome | 253 | Y |
F019106 | Metagenome | 231 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI25386J43895_100030004 | F012334 | N/A | MSSKRPVELGREARLFLLFLSEVNLVMGALFFVYPSLVISLWPWPVKVLAVRFIGAIFLAIAFGCWSALRAKIWQRAKILVLVGGTFFGITSIVSIVLAASQAGGHVISAWTGYFLAASLGNFYLLNRYGWHRKPQDRLGASQPWKSARWFFRVQTIIVGVFGIMMLLLPGVAQAQFWPWLVAIPTLQLFAGLFLATCLATGWASVQTDIGRIRALLPLDVIFPSLALLAVGIHWDVISSQSPSALVTGVWVFIYAFVAVGSAYLYFYSRKITVM* |
JGI25386J43895_100030005 | F019106 | GGA | MASQVPLLTLARLLVLIGGVVLLIGGILQAIDVGGLTDFSTNLARLGXLTGIVVEILVGILALVGSREVANPAWSLILLILGLFVGSLGGILVFIGGLIGLVAHYVKI* |
JGI25386J43895_100030006 | F015579 | N/A | RAAGVTRDDILNSLTKHAHPEQGHVEEASETEESTQFQDSNQTAVPVRTRNRGSARGALVVFLGGFLAVWLYGYVTGAYEIPYLRGVTESPEVQVGVQLVSSNPVLFGAVSASVLLGALYLRHRKKN* |
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