NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25386J43895_10007184

Scaffold JGI25386J43895_10007184


Overview

Basic Information
Taxon OID3300002912 Open in IMG/M
Scaffold IDJGI25386J43895_10007184 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3108
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024084Metagenome207N
F043826Metagenome155Y
F048886Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
JGI25386J43895_100071843F043826N/AMIIVGLSAWIYNEYVNNQYLQMYLFSLFQGRGSVIAVVGFGGLLGTALIGILLKAGNILGEIEHLSEKVEDRTVVTPTRSGRSTLMPVLQIKQAEPVDEIGRLHRSLLRWNERSKGRQ*
JGI25386J43895_100071844F024084N/AMAQRVKYEMRSETLSCLSLPTPKKLMELQXTINEDLTKASLPEVRIGGFRLPDQALEITFERETVTGENRDRLWEIINAHYKKLLRELELKE*
JGI25386J43895_100071846F048886N/AMMVVIGPVLTAAAASSCLLTXLSGNVFACANDLPVFIGGGALFVAGIITCLIGVIMSEPQPRPRPPPSSTNTPQTGQVVCXKCGRVNTFGLFACPFCGQTAG*
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