NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25386J43895_10040751

Scaffold JGI25386J43895_10040751


Overview

Basic Information
Taxon OID3300002912 Open in IMG/M
Scaffold IDJGI25386J43895_10040751 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1355
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007411Metagenome / Metatranscriptome351N
F090080Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
JGI25386J43895_100407512F007411GGAMSLVRWARKTVDRNRRSRKAISTIMANLTMLIIVVSLSSLLFIWAVSSFGAYQGGAGYWFSSRSVANQERMSIEGAYFYAPGNGQNYALIYVRNVGTIPFTIVSVYINSTLYNSPNTFPVLQVNVSQVAPICPSSNGICGPPPNGGGINMHFTQPTVGHGDTQTVTIATQRGTVLTTTWVS*
JGI25386J43895_100407513F090080N/AMTVYRRLARSKKGMSTIFGGLFFVIIILMGFNVMLWGFIQYDAYNHVITXMSQRDQQATSENLVPVNVTCTSTCTT
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