Scaffold JGI25617J43924

Basic Information
Taxon OID	3300002914 Open in IMG/M
Scaffold ID	JGI25617J43924_10003506 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002914 Open in IMG/M

Scaffold ID

JGI25617J43924_10003506 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4538
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4538

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Laytonville, California, USA

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008609	Metagenome / Metatranscriptome	330	Y
F010607	Metagenome / Metatranscriptome	301	N
F015844	Metagenome / Metatranscriptome	251	N
F023559	Metagenome / Metatranscriptome	209	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25617J43924_100035062	F008609	N/A	MKXPLLVLGIILLALGIAAYYVTSQTNLIGGRTHTTYPLAGLGLAVLGALIAVGGVMMGQAGSKTTNQFKCDKCGMTFGSQGALDQHSKDKHGMKAA*
JGI25617J43924_100035063	F015844	N/A	MSVAFKNWHTLGLAAVLYAVNVFLLSISNSMINTSSQSIGGWVVLVISGYLFIGAIYLVSSTLTENSTLSESFPGVIDHFRTFIVGAIAYAIGYFLLFNVAPPLQSTQTLAAAVTLIVGGAIYLVAILVAVAAAFVRPRK*
JGI25617J43924_100035064	F023559	N/A	MNALKKRIPKPDLSKYDPSPLYMYTEKDSLNRVTVLKETAKEIYLIAGRYSGVEGDARLYTPLSDEEKGEIERNLRGSHKDALINHL*
JGI25617J43924_100035066	F010607	AGAAGG	MVKIDRYRVVARFARLFPDPAVFEDQEHLVERYLVQNGLPKEKASYLYQPEDEVNPVDDSGKPAIASGAASFRFQGKNIMAEFMPNASLTLEYYDFGTGLSPEDHSKLWKKQRIGEMSFQLRDFRHETSGLNLTNVSELYEMMKKQSQTTSLSSIELAKMPEDAFRVTVSYLKSQLRKSAEQEGLEVEVYAARELSASEKSSLEKRLTRESTGSTVYVILSKPSDLMKIETH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25617J43924_10003506

Overview

Ecosystem & Geography

Associated Families

Sequences