Scaffold JGI25617J43924_10064920

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25617J43924_10064920

Scaffold JGI25617J43924_10064920

Overview

Basic Information
Taxon OID	3300002914 Open in IMG/M
Scaffold ID	JGI25617J43924_10064920 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1334
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002101	Metagenome / Metatranscriptome	593	Y
F004095	Metagenome / Metatranscriptome	453	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25617J43924_100649201	F004095	AGGAG	MSGINGDKARFNRRRRQKISRRQSNXKMLKALAEKNLVAPAKPENLKEKTA*
JGI25617J43924_100649202	F002101	AGGAG	LTTPVSTLPLSSLENIPAKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVIEARCWWRADLYNLVLINVAGENDTRDKFCTDLRSATPPQRIAFFVGGPEYLAAAPHCDEAPPELDADALHKEMVAALLAQTSGGLSQRWGILEACRKISSVRAISEARSRAIRETPRPSRWAEAIEQYSAPELASPQPMLATETDATQTKREELL*

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