NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25389J43894_1000237

Scaffold JGI25389J43894_1000237


Overview

Basic Information
Taxon OID3300002916 Open in IMG/M
Scaffold IDJGI25389J43894_1000237 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8602
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005263Metagenome / Metatranscriptome406Y
F046962Metagenome / Metatranscriptome150Y
F069908Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
JGI25389J43894_100023711F005263N/ALERRTRRTFTIDPDVSEKIDKMVGGHNLEVNVLVNRAIRRYIEWGRYVDSFKLVTSDPRLMKTLWSHVTVGEAREMGTKNGKDTVVEFILYYFRKFDLDSVLKTFEVIGAEYANAYVYSEFGDKDSRTIILRHSMGLSASAYYGASFKALCDRLGVKCEXEESEDQMTCKISSASTLKTVAPKTLKEQLTKQS*
JGI25389J43894_100023714F069908N/AMTSRTSSSQARLVGIFVLVLIISLAEFAALLLDYQNNRYLRQYVSDNLGTIILATIGLLFVAGGAGYVVSKRLGIPKSPGPR
JGI25389J43894_10002379F046962N/ALEETANVGYPPETPSQTVPQDTMTDDQLKGLLAELISSSASLNVRVWLDGVYTDIENAGTHREWMKGREVYFKVEGKVDGQDSPEEAASRRA*
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Institute for Fundamental Biomedical Research
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