NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25389J43894_1000250

Scaffold JGI25389J43894_1000250


Overview

Basic Information
Taxon OID3300002916 Open in IMG/M
Scaffold IDJGI25389J43894_1000250 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8407
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011833Metagenome286Y
F016379Metagenome247Y
F028762Metagenome / Metatranscriptome190N

Sequences

Protein IDFamilyRBSSequence
JGI25389J43894_10002501F028762N/ATLDRQERWKQQKEEADRQRMGGAYIQGFIETAAALVGEEPLFSKGYWKCASGCKPFGFGLARTPRECPSCHKQLILWVPGP*
JGI25389J43894_10002505F011833GAGMKTFIASFVKGQILLFAPQLALILLILYDRVSFYYGAPVVISLAVLWGWFDYSGKAQRRGASVLKKLERLVDDFGWLNFQEGGGAGSEMVVALLDKASFGSSTLTTPQLATATTEKIKEVYFTLELWYFSMRQKVRLLLRKAASMIEXDLLEVVNEFIEFYGEFVEKVAEXTLRLVAXGDLTSLEXEREGFSTFXTRLAELRGRANAFLQSLRDDGLPVSETKVRALEVDPWFKTGTEISETKQSPQ*
JGI25389J43894_10002506F016379N/AMPGYPERFVKLLYGIILAQFIVIAILLAGFSAEYLSNIYFRIWVDSNFPQLGLLLTGQVDXLLIGMALGGTILLIQRVKNEASIAERTTATLGRPSSLAQSSDLLPNHATRTTIVEVATETPDQVLGELDKHDF*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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