NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25389J43894_1010805

Scaffold JGI25389J43894_1010805


Overview

Basic Information
Taxon OID3300002916 Open in IMG/M
Scaffold IDJGI25389J43894_1010805 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1524
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016136Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
JGI25389J43894_10108051F016136GGAGMTRTMTMLLGIFALAISVLAVPAVAGAAPTGSVDSANRVIFNSGSLTGVFEXNVPHITFYATNELGRTTYQLNFRSLIEFSTSSGESTYESPMLMAKADFDSASWTAGNFYPLKDKTTGTTIGMGFTFTLNNQMTIVEKTPPPQSLKSGDVVLVVKAYNNTRTITVNGQSVTINTAEIKIDFVLKNWPFASTSDKLALQVNMHSDYNHFALDQSTGRTTVDATNDEGAAVMEHPYTETSNTEQSVRYASGPVTSSTNIGFFRFVNTATVTPASGIPQSVQVVAAYKAEKDGPETFLKLYLVYPYFPXGSTLVHDPSFGLQGGLPTLYIIAGGAGVAGLAAVIVIRHRHLQVQRFPKSK*
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