NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25616J43925_10003607

Scaffold JGI25616J43925_10003607


Overview

Basic Information
Taxon OID3300002917 Open in IMG/M
Scaffold IDJGI25616J43925_10003607 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6508
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001010Metagenome / Metatranscriptome807Y
F002004Metagenome / Metatranscriptome605Y
F002288Metagenome / Metatranscriptome574Y

Sequences

Protein IDFamilyRBSSequence
JGI25616J43925_100036072F002004GGAMRKSPNSRRLDEHITRALNKIRKPSTAEEITELLNRDLELEDRPFQTKEVAEWLRNTGNTVLTLYWSRTRPRR*
JGI25616J43925_100036073F001010AGGAMQNTGDPRTRGEIVALIEHVLSDRPGEWRVSIVGSRASDNWEMKVEGPEGFERSYTLVGSAGEHQPVAIGNLLGKLLPASKP*
JGI25616J43925_100036074F002288GGAMGEADGVPKRRMFRWPKEARELVRQYKERTSRSQEHREAERRTLVTTLAEISGNPRDACLRFLRELGINQKREYREWTKPEQQRLLDLIASMPVEKAAKVLRRTAGSVRSMLHRLGMGGKTGREWFTKFSLSRALHTRPDEIQKWIDLGWLKSRSVTTAGTKANIIQADDFCQFVKEHGRAAVSRRLTYDALWFVQNYVFPPSHSELLSVRGTYKKHDAGDDTQPNTESQSACGSEEDGGQEG*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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