NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI25616J43925_10037716

Scaffold JGI25616J43925_10037716


Overview

Basic Information
Taxon OID3300002917 Open in IMG/M
Scaffold IDJGI25616J43925_10037716 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2123
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040483Metagenome / Metatranscriptome161Y
F079694Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
JGI25616J43925_100377162F040483AGGMHYGGDGRMSKSIWAHEPIITPELKLWRAVLEQACVDAELPLASDGSESMERALARRFLRADGASEVKDLNRVCEFADVPADRVILWTRKRYPFAA*
JGI25616J43925_100377163F079694AGGAGMPSYQNVTPPISLMPGDVGFSFNNEAFPGGAQAGSQFAIPSYAGQPDTGTAVRWQTIFGTSPTAVSIVLQGAMADIDAEYQTIDTTTATTGEARAVASVQAKFLRIKFVSSTGGAGLTAKLMV*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.