Scaffold JGI26061J44794_1015509

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold JGI26061J44794_1015509

Scaffold JGI26061J44794_1015509

Overview

Basic Information
Taxon OID	3300002919 Open in IMG/M
Scaffold ID	JGI26061J44794_1015509 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1844
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-37.9728	Long. (^o)	-44.9905	Alt. (m)		Depth (m)	5110
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016015	Metagenome / Metatranscriptome	250	Y
F105373	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26061J44794_10155092	F105373	GGAG	MALSIPRIFEEVAEANSFGARKKVLLENESNPLKDLLKYAFHPDIKFALPSGAPPYKTIGSPDEYNPTYLYPNIRKFYLYIEGGHNGLTQLRREQLFVRC*
JGI26061J44794_10155094	F016015	N/A	MINVNKFENRIVKFKRIDSEGNESDKEAELRRMDYDQTEDIPRSVTARLVDPLNFVITLGYDKSKKKFSGPLGTDIWESNFDIDDFIESSKMGTADRYMRSPKRNRARF*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.