NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26061J44794_1090261

Scaffold JGI26061J44794_1090261


Overview

Basic Information
Taxon OID3300002919 Open in IMG/M
Scaffold IDJGI26061J44794_1090261 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)530
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-37.9728Long. (o)-44.9905Alt. (m)Depth (m)5110
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013358Metagenome / Metatranscriptome272N
F053554Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
JGI26061J44794_10902611F053554AGAAGMKIGIDYSLSSPGVCVNTSKGEFKYEDCSFYYLTGTKKYDNTFKDNDVRYVGTGHKLYTSEPE
JGI26061J44794_10902612F013358AGGAMSVRPKSVCDSCSATFIIVHELPEEEYTEQYCPFCGEEHEEIQEDELLNEDWD*

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