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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002920 Open in IMG/M |
| Scaffold ID | Pfga_1048343 Open in IMG/M |
| Source Dataset Name | Hot springs microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA-MHS Pond Facies_Gas lift |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Illinois, Urbana-Champaign |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9440 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Springs → Hot Springs Microbial Communities From Mammoth Hot Springs, Yellowstone National Park, Wyoming, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Yellowstone Mammoth Hotsprings | |||||||
| Coordinates | Lat. (o) | 44.9766 | Long. (o) | -110.7016 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026171 | Metagenome / Metatranscriptome | 199 | Y |
| F028964 | Metagenome / Metatranscriptome | 190 | N |
| F059420 | Metagenome | 134 | Y |
| F061432 | Metagenome / Metatranscriptome | 131 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Pfga_10483432 | F059420 | AGGAG | MEIELYRGTSTLTTLHYRSVPGQYSWVLRDFQGDLMDEVEVLTREALGGRTLVAGQQGRARRIVIVLDVQGTSMPNLHAAIRELETHTRWRNGTPLELLVRTNSSALWNFIEVVLEQMSAQFEDDQYRATVTMRFACRRVYWKEDIGVVTASNSTLTGNVFVVNLNTMAFYPITGISGKIFNIEYRKESGEWIIFTNDKVWRAPIAGGSATLIGQVPGATILRGATAHDGSILVVAQGVNQLVRFNYPSSAPTVLGSFNGTPFRVRRFGDLYVSVGEFSQYQSATWLAGLVTTNVSGTIVNTFSPFPTSAIYPGGGRVNDVLIKDGVFVAVAHRVTLPWQSWVVVWSNQDLPYYVVEGESPWEPFEIDQSSPIDNVTISANSGIHAGRSFGTLCRLRNLSGIVPYAYPTAPIGGLQTGCAIERFLSPSNEPRKVFILGDDGTAMPLFTANANSLAIRRAGNVMCVGYVTPTAKVWTPLSVNVTSIPNDGTTAEIVPRLGSLSVPVFSFYSGVNDEILGEVIDPQTQAANYEPKYHSGGAVTPLPGTRYERMFKGSKNDGIAKYWFAVGGSVPSVDVVLSRYKHDWR* |
| Pfga_10483433 | F028964 | AGCAGG | MIGADVTLALTSIGPEGRTEAIALGGSFERRAIEVAECELEISTLGTSYNLSAYGNVLLVMLHDRREVYFVTAIERRNTYYVVRGETFLRYMRDYYPDRYAGTSDAQWTGDAAEGVLRSLRPTENVAVYMNVVNFRDYWIVTPDNVPPSVNVETSFAWASRLEAAQEITRLAHAQGFPLVWWFEAGRWCAPKSADGNYIVEPSVALVFAHGLVQKGLFRILWDGSIKYEAWVYDRSQPTAGVALGYGHGEDRDVNRARAPRGLFNGWTYWEGRLDGRATGTSSAAKAALMRWRPIEAGAGQAYSRQMPRLGDQVFLVAGDNQRCAGVAYVVSERYSVSGGQIASAEVGVMQI* |
| Pfga_10483434 | F061432 | GGGGG | MTSGRIDFLERGDSFAPATACVTWTGFVNVSSNNSVTLAVTGLSEVTGNVFEYVPSAQALRIKQAGVIGFLVNISWSAYNIGNLVLQMRQASPLHEWLLLSHPYSTHYNIDLGTGGVRLVNVPSGGANYQIYVTNSGGIGNFTLNVITIRLVYLGRR* |
| Pfga_10483437 | F026171 | GGTGG | MSVGFHKMRATISAAQLADYPVAEALKVLASMPEARTFKLAPEELRRILLEGLPEQYAASLFERAGYRVEVSLADLAYLARYDDTLAELVSSIILYLTQC* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |