NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Pfga_1060435

Scaffold Pfga_1060435


Overview

Basic Information
Taxon OID3300002920 Open in IMG/M
Scaffold IDPfga_1060435 Open in IMG/M
Source Dataset NameHot springs microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA-MHS Pond Facies_Gas lift
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Illinois, Urbana-Champaign
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)691
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Springs → Hot Springs Microbial Communities From Mammoth Hot Springs, Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone Mammoth Hotsprings
CoordinatesLat. (o)44.9766Long. (o)-110.7016Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020181Metagenome / Metatranscriptome225N

Sequences

Protein IDFamilyRBSSequence
Pfga_10604351F020181GGAGGMKVLRSLFAAICATALATTSVYAQKDDPDWAVYNPPRPTVVYTWLELDRSFSYGNANTILDADILLRLPTLYRHDYKPLPSGTRLPIHIAPDVQDLAKARWKVWRFGQFVADGIKVPTIESFLIFRTRQLRTVTYRPLPKLHSGNPIPHRVDGLRYGEMRIPVLNYSPDMITGYPCPQQGEPREAAGEFPRVWLEVGDPRATGAALVPDDPCVT
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