NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Pfgo_1028004

Scaffold Pfgo_1028004


Overview

Basic Information
Taxon OID3300002925 Open in IMG/M
Scaffold IDPfgo_1028004 Open in IMG/M
Source Dataset NameHot springs facies microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA - MHS-Pond Facies_GO
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Illinois, Urbana-Champaign
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)808
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Springs Facies → Hot Springs Facies Microbial Communities From Mammoth Hot Springs, Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.9766Long. (o)-110.7016Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070754Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Pfgo_10280041F070754N/APFDPLTGTLILAPLDRYQIRIRERYFVIIEPLDGTLDGPGPNAFVTASSGSWGAGGTFSMNLQGQDFEQEGFAVGDKVYVLLHWAGGWSGVHASFHCNIIGINGASATFSIIQSTGPTPNIQNPLSATIILLSERTEIKPSFHFGNNSGPNSPLSALPFPSPHADAIKAYVSTANADLPSPLTYNLQKYDTHEASIASEGNALFGYSPLEFRRRAIIIEGTQFYAYRTNLDPQAQAPTSLYALDGRIEVLLQAPVAGRDAALTFPCLL
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Institute for Fundamental Biomedical Research
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