Scaffold Pfgo

Basic Information
Taxon OID	3300002925 Open in IMG/M
Scaffold ID	Pfgo_1101605 Open in IMG/M
Source Dataset Name	Hot springs facies microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA - MHS-Pond Facies_GO
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Illinois, Urbana-Champaign
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot springs facies microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA - MHS-Pond Facies_GO

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Illinois, Urbana-Champaign

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2180
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2180

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Springs Facies → Hot Springs Facies Microbial Communities From Mammoth Hot Springs, Yellowstone National Park, Wyoming, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Springs Facies → Hot Springs Facies Microbial Communities From Mammoth Hot Springs, Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	Yellowstone National Park, USA
Coordinates	Lat. (^o)	44.9766	Long. (^o)	-110.7016	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Yellowstone National Park, USA

Coordinates

Lat. (^o)

44.9766

Long. (^o)

-110.7016

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024322	Metagenome / Metatranscriptome	206	N
F038584	Metagenome / Metatranscriptome	165	Y
F044249	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Pfgo_11016051	F024322	N/A	MSLLQKLRNARQKRYLRLVNPTLLQYEFCPVWANYLNPPSPVQVDTSAGTLTIQTGVVRSFAREYDKSTYAFPFTAGEWVAFYPPPIFVAHYSEFSQIAARMPHAFMVVVPDARMGKSEWGEVEHEAFFLAPAQDSEDFETQLDRIAGVRESLMELWPEKVSFTEIIPKFSRRAEWGTGEKLVKGEWIAIRLTINLKDYELNAV*
Pfgo_11016052	F044249	N/A	MTKREALLTLLSASLTVVAEKYLAVLTALIILGSLTNFLGAICAIKNGEGLRATKILYGTARLAFYLIFYLALLMALERVASYLIPPLLSVAVIYEAGLALRKAVQLNIVPAGLVRQLTKTFRHEPPTKTP*
Pfgo_11016054	F038584	N/A	HIRQQLRDRSPNAGTRIKTSELRSARKLMRRYLRKTNLGTAPPTGYVGEAFYVQREPVIEFVQDYLRTETREVLEDIVQARLNPFTGAPTTVAEGAAKPLLQTSPYKISATYNKLAATDLITDEVLLAYPDIVDFLIWHGTYRLEVLLHNSIITALNAASAVATVPTGIPSPQIVDLLIYMRAFHDQNAAIGPQGDWPATAAIVPFPYYWRLRYGGLKSTTGEYLQLDRQLEGLALIAHGTLQTNPTIVFNENEFEVFFLGDITVNFGRVVESTNDSNVRRLTMDLFYAPLPHAGRPVYVGDTQATIAAM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Pfgo_1101605

Overview

Ecosystem & Geography

Associated Families

Sequences