NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100004

Scaffold Water_100004


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100004 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)66257
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (31.91%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030662Metagenome184Y
F038058Metagenome166Y
F039455Metagenome163Y
F048735Metagenome147N
F055388Metagenome / Metatranscriptome138N
F072994Metagenome / Metatranscriptome120Y
F080806Metagenome / Metatranscriptome114Y
F091224Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Water_10000413F048735N/AMEYNGFSLQPPSDTTYGLSFLETVPQFIRELTAYRLTRGEFGRRERIKMGIKMDQCGLLNPAQHMINCFQLIYGNDVLLHSQGIPNNYAIDIIDLFCNENDWGIAGCASSGKTFSVAACIVVDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQAKYGKDASIGNLVEYRRMIVFESIDTRDSERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPMEWDAVNRYTHKWKTRTGVALHLSGEDSPNFKVPNAEIPPFDRFLTIQGEANTLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQGCDIAWEPTWSDRTKVVCGFDPAFTAGGDRCAATFCRYGPNETGRRVGFYLGTREYSSSVGDVFEESIAMQLVKDCVEYGIHPRDFGLDISGDGGKMLRAIIIEWGKFHPEAMFIHPISSMGMPTDRKISNLDKRTAKEAYDRRVTESWFQVHTAMSTKSLVGIDVDKHTALVSELCSRLYFHKGRKVAVEKKLDMKQRIKKSPDLADSLTYAVEMLRKAGLEFTFEEEQESLDILEIRDWEEKLVYSKNGVGNEAEKQDDWGYGGSSVDPDGF*
Water_10000414F030662AGGAGGMKLKNPNDAIPGGLWYQYSDDKGNNYRVNGMDLTFGKQFIQKVKSDMTNKNVAIPENLDYLVEQQICQRIAGQYCWQEAGDAVANVIHKFAHLGDKVASTFGINAQLEVRAKNCPACQKRREALNKAIG*
Water_10000418F055388N/AMAQNGVTFSSCQDVDTLFREARVYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWQEVQSGRCIQNADDVQFEFIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCVTPDDQMFIVQPFEGTNEGSFNMGYVYVKLPASQLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWTYNASLPTFNVNDPTTWPRLVRVLPYVPVTTELGCKYVQNPAFNYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLVIPAACNLAPNYTPQYTPDCYVCSDVITEPI*
Water_10000423F072994N/AMITLTSPITIAPSPVHGKPLKPTTLTNIDYSVSYDNTQQQANARLKGVNVSLTLWSQHTNPPYSSIGQFTDADTDARISELLNVKAGNAAIEKAILALFPQPYKQI*
Water_10000424F080806N/AMVHHIDTAATGAIGMTAPLAAAAISLDPMIDLELRIASMVIGIFVGLASFAKLLYDLYKDHKNRNK*
Water_10000433F038058N/AMASHGVQYTVDKTERGIVSDSATPQPMQRVNLRNDIPAIRAFKDARTVRIKAIGESSQSAFSVGGPANESGMGKNSNPFQADWI*
Water_10000440F039455AGGMASVHVNAGRYGDIISFLPVLYNEYQETGIKPRLVVAKDYADILDGVSYVDPLVFDGAFEDVAGAIQFAKQFTDDVKTSQVVGISDVIVSQVYGESHAPKIICDSFQKDAWKLAEKLDLWPSQPPLVFDRRDRKREKLLYKYIPTLKPWIVVSTGGISSPFPYRELLWEILNHCLPEFHIVDIAKIKAERMYDLLGIMDHPNTAAMILTDSGPLHLSYAATKPVHALIADSPSLWYGSAWRQSYASYTRYKNFPRDVTRVLDLIRNPPSKPKHPNIIHVYQRTPWATGEEKRRNEVAAKTWDRIGWVDCGLDDNCFVRHAGNVIPNETKNIPMIKDMLRMACIGRDDKDVLVLTNTDTCVASNLLERLTGSLPVYAYRNDFKILDRPIADDQICLGKKYQGCDLFAMRVGWWRRNHSLFPDMVLGRHSWDRILRELFKIAGGREIPNLIYHEKHPSAWENPSNLNNDPSNLRNAKLAREWLQERKMPLEELEFLNYEGRFKKPVKKR*
Water_10000443F091224GGAMRSAIDNILNELGMETPELEPINKKEAYERGMIQGREKPKQCACGKSAFSSMASCDAAIKHRLKQGFGGTGFLRAYECDIVRGNFHMSSTNNKKKL*
Water_10000490F055388N/AMPAQNGVTFSECQDVDQLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWQEVQSGRCIQNADDVQFEFIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCVTPDDQMFIVQPFEGTNEGSFNMGYVYVKLPASQLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWTYNASLPTFNVNDPTTWPRLVRVLPYVPVTTELGCKYVQNPAFNYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLVIPAACNLAPNYTPQYTPDCYVCSDVITEPI*
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