NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100027

Scaffold Water_100027


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100027 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36571
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (26.79%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Associated Families15

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003579Metagenome / Metatranscriptome478Y
F005113Metagenome / Metatranscriptome411Y
F009125Metagenome322Y
F012017Metagenome / Metatranscriptome284N
F013396Metagenome271N
F022191Metagenome215N
F029672Metagenome / Metatranscriptome187Y
F043279Metagenome156N
F046246Metagenome151N
F046325Metagenome / Metatranscriptome151N
F050991Metagenome / Metatranscriptome144N
F074549Metagenome119N
F083888Metagenome112N
F083896Metagenome / Metatranscriptome112N
F098560Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Water_10002712F012017AGGMATKRILIGTPLKGDIPKSYFRTSLVMASAKIPDVKLDWILLDGPAVQIARNEIAAYAIENNFDEVIFWDKDVLAQRNGVDVTDSALMRLIGHDKDIVTSVYASRSLDTHWHVTPLPNEMANEQGLQKVERASIGFSKIKVSVFKAIAHDNPDRVAMLLDPNRAPRSIPELFPMELQGRNIPSYRLQQIKNALTDCKNDDKLRMRIERELSVRYDEPNAYLSEDYGFCKLARESGYDIWMDTLMVLGHESRVTLPIETPKLMEMLSEPWRKEELAVIKTQLMEQNQKAKEKNNNLRN*
Water_10002714F022191N/AMAKGVKVDGKHGKATYSPQRLINSVAMATLDGRGLGLKKHPSLGDVTVDDRRVLQRIVGITVEEFNQRLIGKLDTLADKIVDRMLETVDDTPLQTLGFNLAVAIDKRQRIAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKTGVPTIQSAPVDIGNCNDIDAKISKKTGAVKD*
Water_10002720F029672N/AMKSHTRNHSHREAAQARDEQRRSEYARFAPLSAEIAAIYDSRRLTEADIDHMAELDTEARTFNRQSVNYHE*
Water_10002732F083896N/AMQAVHQIELGEWLRDQGITQVLEHTPDSWVDAFEEKAASLLWNQGSFTAEEVVSRIGPPPNHLNAIGAVCRAYARRNDLVGSYEKATNPAAHARVIVRWRDGGNDK*
Water_10002734F046246N/AMNFSEHAFDACCREAKAIGRRLNKTEWLEAMQEAYDSYPHEGLLATDAPKVRATRIKAVDAEWLEELEKNPAYAGIDIKRELGKAQAWASVRKVGVSQMRFLNWLNKAEATQRPIQFNGSGATSFPPPSAQTSSEPKGWREWVRENSTDPSNADRPWNALETVAQKYILTQLQK*
Water_10002739F043279AGGAGGMTPEEATPTCQPEVAHARAKDLDAASNAKLALICGELTAGEIRTLRAMLSYILRPPAEGKSTGYEGMTNALQTIRRSNEDVEQWLAQHIGNLRDGRDRMQRQIYSLKRRISKIENTIY*
Water_1000274F046325N/AMSSDQIVTDIPKEFVRKWWWEIQNGLPNEKAKVHEDQARLAAEMRKQGSTQMEGLGQMAARINSRLFFRLQGQHGNNVHEWMPEYLKDNPHLCAVGYRPKVNAARHGLTGGWMKTKD*
Water_10002741F098560N/AMKIEMKRPNKEMADSIETMLNDFVKISTIARNLKTQVVTVYRYISYLQYTKVMVSDTELKMIINHRKARKASLVAPAQSTPAPGVTHAATPVLGA*
Water_10002744F083888N/AMNYKTLPNSNHSPCECNATSGDRIKGIPDKVQRPARKEINVTSIGSKMKIDNKGYKIVNLSATLQPVGTDGKGMKKKKKYMEDDGDSAYDES*
Water_10002751F009125N/AMTSENIRATLTAATPAVAMVSLSQINEVAALVGTLLGIAFLLWRWHKQWKAGNVKNLD*
Water_10002752F074549GGGGGMNLTDILFNAASGGVVGSLLHLGTSFFETWRKKKDAEVEIMLLNAKLAAAEKEAAWTAFTASQKTGDTTLVIPTGTWPWVGSIYVLVDAFRQLTRPGLTWAGFIFLTSVYFSASPEVRATMSPEIQFGSWTLIFWWVGARYNKAK*
Water_10002753F013396N/AVTLRRSILVAVLALGLVVVLGLALRSERVLTAGLPLRIVAASEADAWTLAGPSAVVVLGTGSMTPYIPAAPAGADPLRTVCALVVLVPGASYADIKAGALCIYVPVWAGRNVMHQAAQIDAGGWIMTGLGNKEYENKERVTAANFVGIVARTYVWGK*
Water_10002754F005113GAGGMTKDEHKNAIVTQLQQQSLNLLVDSLAAALAEIETLKAAAADKPTP*
Water_10002755F003579N/AMTIIPIAPYTMGSPAAPKVGTQFEVRYVQYTSPTAVADCHLLDAEGVEIMPVGLVPATAEQCAVWVNDDKFAEVLAVNAGFELPEE*
Water_1000278F050991N/AMKKRRDPHQSSTEKFSNLRHTMFGLVGNDNFQNFIEELREMQHSTMIDLCSDAVVQNDRMTLASTGELRAYSQIIGLYDDFVQQQLLQAETDAEERGA*
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