NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Water_100061

Scaffold Water_100061


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100061 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25483
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (91.89%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Associated Families11

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000857Metagenome / Metatranscriptome858Y
F001059Metagenome / Metatranscriptome790Y
F001915Metagenome / Metatranscriptome617Y
F003521Metagenome / Metatranscriptome481Y
F004695Metagenome427Y
F005087Metagenome / Metatranscriptome412Y
F006264Metagenome / Metatranscriptome377Y
F012214Metagenome282Y
F012670Metagenome / Metatranscriptome278Y
F040590Metagenome161Y
F099270Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Water_10006114F001915AGGAMEEFSWRLAHPLDDVDDIVEMADTVFGQEADGILTRDRNVFRKHVTIASTVQLFDKGREFLAVCRDVDKLVGYCWFDRGGYTTYANEEISNAKFHHVDLSLPVRTRVRLLNEMIDQHILWASSWGIPVICSTSIRAEHDGFMRIHKKRGFTVNGSYAWIRTENGLKDMK*
Water_10006115F012670AGGAMKIPKPSDAIYGDIRPEDSNVTSEEEKQKKRDYYQRKKAEQKAMKLATGQQPPKEPRPEPNIGTSIPNMGRPKSVVNRVTEYGALFNKLNDERAAKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLQSLRKV*
Water_10006117F099270AGGMTTNFQFAQAPNRKGNVSKHTASKSGGSTNITAAKHGTATPKGNQGAPKASGNVYPVGNKVSVNTHADYCGHIMNDGYMNKSVKNYGG*
Water_10006118F040590GGAGGMSAYGKVISGGKAMTNGLTKGINKKLDAFADSHKRSATLAVAVRDTFNQNPLSDPHHNNVNGKKFTTPKLPSKV*
Water_10006120F001059AGGAMATYDIDALKEDLPTAKDLAQFVYDKTQIALDLIGKPKEDQYQVAKNALEGRKIPSEYLTDVNPYIDKRELIPEDDLPPLPERPADLPNIDSQIHYFGATNMPHPSNPQSDEKVAIDFRKYDNGTVTFQIVGPVFQVAVGERLNKFGQRVPEKYAWNDPRTGETLMKRPDGTYTERGRKLFQYCSGEKGGGIWGLIDRDLTSISSKNIVDPWA*
Water_10006121F006264N/AMEDQSSVFRQKLSAQAEVCARKTLEWLQKDLQGDRTLPPQDVYYLASAADLLLAMRDLYGKK*
Water_10006123F004695AGGAMLDRQNIIVEYIEAPSGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDGDQAAQATEMVKYMVNSKNDSYAIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVDLQGVMQEMMAPDESEQVQNMQEEMSEAIRASTIYRAKYKMTGFSTSVKIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTIHECKSQFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVECCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFIDAEEIQRGVSAMFVLDRKFDPAKHIYEFSPMQGNLAYVQSSMERFEADKMAMIGMTSPGDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDVLYIVWKTLIQYADDYNIQQLAGVCGKGKPFMDAISMDNYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQQQFSQMMMQLDPSAPELFSKMRRPFEDTLRVLGVKDVDAYLPTMEEAAKVGAG*
Water_10006125F003521AGGAMKSLVLNIREYFNRRTKNSDSHKEADVTRKALVIENGESASRLIKNEDFALLFNLYRFDLLGRLEECRTDPERIENAFNIAGVRDFIGFIEKTEFLGKVAKKSIN*
Water_10006128F000857GGAGMDDEVKIDESYYSGGILEGGIDGVFRHNDKLYNEVKSGTWSQTFNTPNIDYKVGAVDGVRYVQYDQKNVEVIRQKCKELREFYKEHGTDNPFFAGTAHMMELPKCFAHEISSKWFNNRPWELIKREREDKILFYAIVNEHYSDFVCHPSGKIPIPYNPSIPTR*
Water_10006129F005087AGGAMALFIQSANALVSRIASWVGAIPSSIGINASSYNSSTGVITCASNPSALILVGDFIGPNMMGPFAAVLAVSSTTITVNDPDAVWTGVTYPTTILKLPSASALEIQACIQMAELKMRTIELPALRSDPYATVSPSTLTTNAQGMAPIPSDMCFPILFFQESPPSNQAPGATALGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGENVVIKAYYQKTFPFLFSTTGDNLNPIVQSNGVLASFPEGYLYGTLSAYYDKNKNVEESQKWDARFDASYGLIEDQNYKGKWRGGDQHLTSEFQPRNYRYSFK*
Water_10006133F012214GGTGGMSDYQRLRTPFPQMSFTPDVPSNALGPNEYNSGRNVEADVRGIKKIYGEQDILSTIPNFPIFMDGGFRTEGQWIYIVATRDSSDRGRWYVITTAGITNVTPGIGGNPSAYLTGYTENINITTSWVGGVFFINDGLASPMYLLPAAVPYEIYKYDAAPNNYIWNYDIGVSGTRAAFVRNFCSPNVGNILIAGNLTKDYTSSGLTINYPTTVRWSQAFANTGVPATWEPTLSNVANEQEIPVRGPIVDGFFLGGNFYICSYWDTVVLSPIAYQNSTAPIFGVRLFNQGRGLINNNCWSNTDTNVYGVDSRDIWVFNGSDFAPLGNQKVRDYFFRNLSTTYSDRIFMINNTQKNQIEIYYPDLTSSGWCNKMLSYRYDLQIWNAPKDIGNACMGAEAPVYTGGVFKFASRTVTYAPAGASSKLIQTNIGNSFINGEPIPALFERNNMVLQGNQGPVPYSSKVYIHRLLPEIAGTGAIDITVGGSNSTAQPATYGQTGHVNIVTDNPWVTTQQNNVRTISVKVESNDATDAWNLTALNWQATVVEDAF*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.