NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100101

Scaffold Water_100101


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100101 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19297
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (82.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002399Metagenome / Metatranscriptome563Y
F010392Metagenome / Metatranscriptome304Y
F025510Metagenome / Metatranscriptome201N
F035770Metagenome171Y
F066237Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Water_10010116F066237AGGAGGMFDVISYDANGNEDKVMANKLKQGFAKVYDNTCKECLGTGKRKITFEDCFGKPVPEKTVYLKCKCKEVK*
Water_10010122F002399AGGAGGVALKNKSHKSILGQMRKKYGLKDNVDPKKAEIAMTPDDWKIFSEALTFPNGKPSTREDK*
Water_10010123F035770GGAGGMKSKNISFRQAEFAYARHLRDVVKHEREIIYPNEDKSNKSRDGVWHLLTIKGEPLGMVYPNGTVRLT*
Water_10010132F010392N/AMMSEKNKTENVEEPTIKFADDGVEHKVNDMPDEAKQLMARWQEKKQIRDEFIIKANNDIDDLNILLSSYEARMKNIVEPAEDEPKIEVQ*
Water_1001019F025510AGGAMKYIKKFWVWLKETIHKFLNWFDNLMTPAPVVKKRGRPRKK*
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