NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100291

Scaffold Water_100291


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100291 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11240
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (75.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001407Metagenome / Metatranscriptome702Y
F005105Metagenome / Metatranscriptome412Y
F015027Metagenome / Metatranscriptome258Y
F045427Metagenome153Y

Sequences

Protein IDFamilyRBSSequence
Water_10029111F001407AGGAGGMSIIKQDQRRLDNIANAYWKTSGDVREMWGRKWYELIRIIVRRIDENKRFSTDTRKVH*
Water_10029116F045427GGAGVIELIKRILRLKSIDRDRGTNPAKGVSLDLSDEGISKPEQRLSASDGESTGRSVSTDDMEYQGGGAYKAILKLFSNQLDDEKFAEHCKKFFKGNNDD*
Water_10029120F015027AGGAGGVTDELYEATKKEVMSEHEEYVNADVPIEIWIERNKYLHQHIDMLTEELIKVRLDNKKLSKQIEDQIKQFRNTGGI*
Water_10029122F005105GGAMVRKICDRCMGNGYRRIWKDQTESEKITIQCMKCESAGEIDEEPSYDYSGVDINKLQ*
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